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lateral-gene-transfer

Here are 5 public repositories matching this topic...

songweizhi / MetaCHIP

Horizontal gene transfer (HGT) identification pipeline

bioinformatics metagenomics hgt horizontal-gene-transfer lateral-gene-transfer lgt

Updated May 17, 2023
Python

beiko-lab / arete

AMR/VF LGT focused bacterial genomics analysis workflow

pipeline nextflow reproducible-research metagenomics virulence-factor recombination pangenomics rgi antimicrobial-resistance lateral-gene-transfer mobile-genetic-elements bacterial-genome-analysis antimicrobial-genes-annotation genomic-islands-prediction poppunk

Updated Feb 19, 2026
Python

songweizhi / HgtSIM

A simulator for horizontal gene transfer (HGT) in microbial communities

bioinformatics simulator metagenomics hgt horizontal-gene-transfer lateral-gene-transfer lgt

Updated Oct 5, 2020
Python

Dunning-Hotopp-Lab / Dananassae_LGT

Extreme lateral gene transfer into a fly autosome

genome-assembly long-read-sequencing lateral-gene-transfer

Updated Mar 7, 2022

dinhe878 / GAGA-Metagenome-LGT

This repository provides the code to screen de novo assembled ant genome assemblies for bacterial and other sources of contamination.

bioinformatics ant metagenomics hgt horizontal-gene-transfer lateral-gene-transfer lgt

Updated Apr 3, 2026
Shell

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