An R package to infer and analyze synteny networks from protein sequences
a versatile toolkit for processing and analyzing diverse types of sequence data
An R package to perform systematic quality checks on comparative genomics analyses
A dashboard to explore and download the duplicated gene repertoire in eukaryote species
A tool for phylogenetic comparison and analysis of microbe including gene's environmental association
Code and data associated with the paper "doubletrouble: an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications"
Machine Learning to predict functional relationships of uncharacterized proteins through orthology and co-evolution information.
R Shiny application for browsing Acomys cahirinus positive selection signals in protein-coding-regions
Website for the Ewing Group.
UC Berkeley IB 161 (Population and Evolutionary Genetics) Spring 2021
split-based gene tree–species tree reconciliation for robust branch mapping under missing taxa
Research projects conducted at the GeneMAP Research Center
Analysis code for the whale shark genome project
Mapping And Prediction of Shared Elements in Alignments
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