A fully reproducible and state-of-the-art ancient DNA analysis pipeline
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
A Snakemake-based pipeline for processing and quality-controlling ancient DNA data, including contamination assessment and comparative genomic analysis across time points, producing damage-rescaled, mapped reads ready for downstream analyses.
Data and scripts to reproduce the molecular clock dating analyses presented in "Ancient bacterial genomes reveal a formerly unknown diversity of Treponema pallidum strains in early modern Europe (Majander et al.)
Raw code to get polymorphisms from samples analysed by using the PowerSeq® CRM Nested System kit (Promega Corporation)
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