feat: add C implementation of math/base/special/kernel-betainc#10279
feat: add C implementation of math/base/special/kernel-betainc#10279nirmaljb wants to merge 26 commits intostdlib-js:developfrom
math/base/special/kernel-betainc#10279Conversation
Coverage Report
The above coverage report was generated for the changes in this PR. |
|
/stdlib update-copyright-years |
|
Thank you for the suggestions! @gunjjoshi |
|
Fixed the issues |
|
Note: The following three Rocco Romeo cases are not added out because they require long double (80-bit extended) precision to match the Wolfram reference values. Boost passes these by internally promoting double to long double (its default
|
math/base/special/kernal-betaincmath/base/special/kernel-betainc
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: passed
- task: lint_package_json
status: passed
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: passed
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: na
- task: lint_javascript_benchmarks
status: passed
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: missing_dependencies
- task: lint_c_examples
status: missing_dependencies
- task: lint_c_benchmarks
status: missing_dependencies
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: passed
- task: lint_license_headers
status: passed
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: na
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: na
- task: lint_c_examples
status: missing_dependencies
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: na
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: passed
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: na
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: na
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: na
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: na
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: passed
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: na
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
Co-authored-by: Gunj Joshi <gunjjoshi8372@gmail.com> Signed-off-by: Nirmal Jyoti Biswas <59522492+nirmaljb@users.noreply.github.com>
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: na
- task: lint_javascript_benchmarks
status: passed
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: na
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: na
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: passed
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
1. Complete reference taken from boost test_ibeta
2. only a naive test of ibeta_derivate is present, complete test is still left
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: passed
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: na
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
…d from [1, 40] but medium_range had fixtures from [0,100]
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: passed
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: na
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
remove the output.json and it's fixtures and test cases,
because it ranged from [1, 40]
but medium_range had fixtures from [0,100]
so no point in keeping output.json fixtures
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: na
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: na
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
|
Thank you, @Neerajpathak07, for taking the time to review this function. It's a huge function and would require line-by-line review, and I really appreciate you doing that. |
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: passed
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: na
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
| lb = largeAsym.b; | ||
| for ( i = 0; i < lv.length; i++ ) { | ||
| y = kernelBetainc( lv[i], la[i], lb[i], true, false )[0]; | ||
| t.strictEqual( isAlmostSameValue( y, expected[ i ], 87 ), true, 'returns expected value' ); |
There was a problem hiding this comment.
They seem high ULP diff numbers here. Is there a reason why that is the case?
|
Hey @nirmaljb, pulled your branch locally since kernel-betainc is a dependency for some of my downstream work, wanted to make sure things look good end to end. Overall looks solid. Two small things I noticed: In The ULP tolerances in Great work on this overall, its a complex port. |
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: passed
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: na
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: na
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: na
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: na
- task: lint_javascript_benchmarks
status: na
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: passed
- task: lint_c_examples
status: na
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: na
- task: lint_license_headers
status: passed
---
| for ( i = 0; i < 100; i++ ) { | ||
| x[ i ] = random_uniform( 0.0, 1.0 ); | ||
| a[ i ] = random_uniform( STDLIB_CONSTANT_FLOAT64_EPS, 100.0 ); | ||
| b[ i ] = random_uniform( STDLIB_CONSTANT_FLOAT64_EPS, 100.0 ); | ||
| } |
There was a problem hiding this comment.
syncing these ranges up with the corresponding JS benchmark. Used random_uniform something we also did in a few other special functions.
cc:- @kgryte
|
@Neerajpathak07 Thank you for taking the time and effort to make these changes! |
Signed-off-by: Neeraj Pathak <neerajrpathak710@gmail.com>
| lb = largeRange.b; | ||
| for ( i = 0; i < lv.length; i++ ) { | ||
| y = kernelBetainc( lv[i], la[i], lb[i], true, true )[0]; | ||
| t.strictEqual( isAlmostSameValue( y, expected[ i ], 24771 ), true, 'returns expected value' ); |
There was a problem hiding this comment.
@kgryte Here if expected values are very large and the kernelBetainc function is making large number of internal calls then the high ULP Diff could be viable if I am not wrong. Plus we can add a comment mentioning the reason behind it as well.
| upper = !upper; | ||
| } | ||
| if ( b < 40.0 ) { | ||
| if ( stdlib_base_floor( a ) == a && stdlib_base_floor( b ) == b && a < STDLIB_CONSTANT_INT32_MAX - 100 ) { |
There was a problem hiding this comment.
| if ( stdlib_base_floor( a ) == a && stdlib_base_floor( b ) == b && a < STDLIB_CONSTANT_INT32_MAX - 100 ) { | |
| if ( stdlib_base_floor( a ) == a && stdlib_base_floor( b ) == b && a < STDLIB_CONSTANT_INT32_MAX - 100 && y != 1 ) { |
Would be good to add a safe-gaurd for y!=1 as per used in the boost implementation.
Re:-
if((floor(a) == a) && (floor(b) == b) && (a < (std::numeric_limits<int>::max)() - 100) && (y != 1))There was a problem hiding this comment.
Thanks for noticing, I realised it as well, but I decided not to put this condition because it was not present in the javascript implementation. (Line: 349-354).
if ( b < 40.0 ) {
if (
floor(a) === a &&
floor(b) === b &&
a < MAX_INT32 - 100
) {What do you think we should here?
There was a problem hiding this comment.
Naturally we are interested in aligning the C implementation here to the reference Boost one. But for this we need to investigate what value this adds to the function.
math/base/special/kernel-betaincmath/base/special/kernel-betainc
Planeshifter
left a comment
There was a problem hiding this comment.
Thanks for tackling this rather involved PR!
1. Match the function description in readme to match the description of main.c
2. Update interpolation in benchmark files
3. Remove broken test case from test.native.js
4. Update bool upper to const bool upper
5. Format the mainfest.json
6. Add JSDocs to ibetaFraction2CF in main.c
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
- task: lint_filenames
status: passed
- task: lint_editorconfig
status: passed
- task: lint_markdown
status: passed
- task: lint_package_json
status: na
- task: lint_repl_help
status: na
- task: lint_javascript_src
status: passed
- task: lint_javascript_cli
status: na
- task: lint_javascript_examples
status: na
- task: lint_javascript_tests
status: passed
- task: lint_javascript_benchmarks
status: passed
- task: lint_python
status: na
- task: lint_r
status: na
- task: lint_c_src
status: passed
- task: lint_c_examples
status: passed
- task: lint_c_benchmarks
status: na
- task: lint_c_tests_fixtures
status: na
- task: lint_shell
status: na
- task: lint_typescript_declarations
status: passed
- task: lint_typescript_tests
status: passed
- task: lint_license_headers
status: passed
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes. report:
Progresses #649 .
Description
This pull request:
Related Issues
This pull request has the following related issues:
Questions
No.
Other
No.
Checklist
AI Assistance
If you answered "yes" above, how did you use AI assistance?
Disclosure
I used codex to find references, but the proposed changes were fully authored manually by myself.
@stdlib-js/reviewers