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@include-dcc INCLUDE Data Coordinating Center

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    32 repositories

    • include-portal-ui

      Public
      TypeScript
      •
      Apache License 2.0
      •2•0•0•2•Updated Apr 22, 2026Apr 22, 2026

    • include-access-model

      Public
      Data warehouse model for the INCLUDE DCC
      Just
      •
      MIT License
      •0•1•11•2•Updated Apr 17, 2026Apr 17, 2026

    • whistle-ingest-modular

      Public
      Python
      •0•0•3•0•Updated Apr 14, 2026Apr 14, 2026

    • include-linkml

      Public
      LinkML Schema for INCLUDE DCC
      Python
      •
      MIT License
      •4•3•48•1•Updated Mar 25, 2026Mar 25, 2026

    • include-model-forge

      Public
      GLSL
      •
      Apache License 2.0
      •0•1•1•1•Updated Mar 16, 2026Mar 16, 2026

    • include-dbt-sandbox

      Public
      sandbox for prototyping dbt work
      Python
      •0•0•0•1•Updated Feb 23, 2026Feb 23, 2026

    • unwrangle

      Public
      Python library for interacting with Dewrangler and other ID related systems for use with INCLUDE ETL
      Python
      •0•1•3•1•Updated Dec 3, 2025Dec 3, 2025

    • harmonica

      Public
      Tooling to harmonize condition data to ontology terms.
      Python
      •
      MIT License
      •0•1•7•0•Updated Oct 3, 2025Oct 3, 2025

    • smolder

      Public
      Python
      •0•0•1•1•Updated Jul 24, 2025Jul 24, 2025

    • include-app-drs-registration

      Public
      Python
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • include-dbt-kids-first

      Public
      The "Gabriella Miller Kids First Pediatric Research Program" data harmonization dbt pipeline.
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • Data-Harmonization-and-QC-Team

      Public
      Repository for tracking data harmonization and quality control efforts for the INCLUDE Data Coordinating Center's Data Management Core (DMC).
      Jupyter Notebook
      •0•1•11•0•Updated Jun 5, 2025Jun 5, 2025

    • harmonium

      Public
      Human Guided Data Harmonization
      0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • whistle-ingest-linkml

      Public
      Whistle ingest based on the linkml model
      Python
      •0•1•0•0•Updated Aug 26, 2024Aug 26, 2024

    • include-fhir-access

      Public
      Overview of how users might access the INCLUDE FHIR servers
      0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

    • ontology_mappings

      Public
      Code and resources for handling ontology mappings
      Jupyter Notebook
      •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

    • include-users-api

      Public archive
      API to manage Include users
      TypeScript
      •
      Apache License 2.0
      •0•0•0•25•Updated Aug 17, 2023Aug 17, 2023

    • data-models

      Public
      Data models for INCLUDE Data Curator app
      1•1•0•0•Updated May 10, 2023May 10, 2023

    • DMC_V3_Roadmap

      Public
      Board for May Release Roadmap
      0•0•9•0•Updated Apr 24, 2023Apr 24, 2023

    • data_curator

      Public
      Data Ingest Shiny App
      R
      •
      Apache License 2.0
      •21•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • DMC_v3_tasks

      Public
      Issues for DMC v3 project board
      0•0•30•0•Updated Jan 19, 2023Jan 19, 2023

    • inc-portal-model

      Public
      Portal model Whistler Project to ETL include data into FHIR
      Python
      •0•0•6•0•Updated Nov 3, 2022Nov 3, 2022

    • ds-connect-whistle

      Public
      Whistle projector for ingesting DS-Connect into FHIR
      Python
      •0•0•3•0•Updated Jul 28, 2022Jul 28, 2022

    • htp-whistle

      Public
      Whistle projections for ingesting HTP data into FHIR
      0•0•0•0•Updated Jun 24, 2022Jun 24, 2022

    • include-keyckloak-ext

      Public archive
      Include Keycloak Extension
      Java
      •0•0•0•0•Updated Mar 23, 2022Mar 23, 2022

    • FHIR-Utils

      Public
      Scripts used to help with ingestion into FHIR for various datasets
      Python
      •0•0•0•0•Updated Mar 7, 2022Mar 7, 2022

    • kf-etl-clin-portal

      Public
      Import clinical data into portal
      Apache License 2.0
      •3•0•0•0•Updated Nov 24, 2021Nov 24, 2021

    • projectLive_include

      Public
      R
      •
      Other
      •1•0•0•0•Updated Nov 11, 2021Nov 11, 2021

    • fhir-ingest-htp

      Public
      scripts used to load HTP data into KF dev FHIR server
      Python
      •0•0•0•0•Updated Oct 29, 2021Oct 29, 2021

    • clinical-include-r

      Public archive
      Shiny application that displays clinical data
      R
      •0•0•0•0•Updated Oct 8, 2021Oct 8, 2021
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