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@Clinical-Genomics

Clinical Genomics

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  1. scout scout Public

    VCF visualization interface

    HTML 178 50

  2. BALSAMIC BALSAMIC Public

    Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

    Python 58 15

  3. raredisease raredisease Public

    Forked from nf-core/raredisease

    CG's rare disease pipeline in next flow, see the main repo here 👇

    Nextflow 6 2

  4. MIP MIP Public

    Mutation Identification Pipeline. Read the latest documentation:

    Perl 47 11

  5. microSALT microSALT Public

    Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

    Python 3 3

  6. MUTANT MUTANT Public

    Microbial Utility Toolbox And wrapper for data traNsmission and Transformation

    Python 1

Repositories

Showing 10 of 119 repositories
  • cg Public

    Glue between Clinical Genomics apps

    Clinical-Genomics/cg’s past year of commit activity
    Python 11 3 109 38 Updated Apr 20, 2026
  • oncorefiner Public

    Repo for secondary layer of WGS cancer analyses

    Clinical-Genomics/oncorefiner’s past year of commit activity
    Nextflow 0 MIT 1 2 5 Updated Apr 20, 2026
  • statina-ui Public

    Frontend app for Statina

    Clinical-Genomics/statina-ui’s past year of commit activity
    TypeScript 0 0 2 2 Updated Apr 20, 2026
  • scout Public

    VCF visualization interface

    Clinical-Genomics/scout’s past year of commit activity
    HTML 178 BSD-3-Clause 50 228 (3 issues need help) 3 Updated Apr 20, 2026
  • bump2version-ci Public

    Repository to host automated bump2version CI to run on python repositories

    Clinical-Genomics/bump2version-ci’s past year of commit activity
    Shell 0 0 4 1 Updated Apr 18, 2026
  • statina Public
    Clinical-Genomics/statina’s past year of commit activity
    Python 2 3 18 0 Updated Apr 17, 2026
  • microSALT Public

    Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

    Clinical-Genomics/microSALT’s past year of commit activity
    Python 3 GPL-3.0 3 17 3 Updated Apr 15, 2026
  • hermes Public

    Communication layer between CG and the pipelines.

    Clinical-Genomics/hermes’s past year of commit activity
    Python 1 0 6 4 Updated Apr 15, 2026
  • BALSAMIC Public

    Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

    Clinical-Genomics/BALSAMIC’s past year of commit activity
    Python 58 MIT 15 85 11 Updated Apr 13, 2026
  • patientMatcher Public

    A MatchMaker Exchange server

    Clinical-Genomics/patientMatcher’s past year of commit activity
    Python 12 MIT 7 6 0 Updated Apr 13, 2026

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