Some CWL generators, like cwlgen, output map<> format but still retain the id in the map entry's values, even though the 'id' value is also the map key.
This should be stripped out.
Example: https://github.com/PMCC-BioinformaticsCore/janis-pipelines/blob/536f8181dd3edaa7339483cc28610e3acde5d105/janis_pipelines/wgs_germline/cwl/WGSGermlineMultiCallers.cwl#L22
inputs:
align_and_sort_sortsam_tmpDir:
id: align_and_sort_sortsam_tmpDir
doc: Undocumented option
type: string
default: ./tmp
Some CWL generators, like cwlgen, output
map<>format but still retain theidin the map entry's values, even though the 'id' value is also the map key.This should be stripped out.
Example: https://github.com/PMCC-BioinformaticsCore/janis-pipelines/blob/536f8181dd3edaa7339483cc28610e3acde5d105/janis_pipelines/wgs_germline/cwl/WGSGermlineMultiCallers.cwl#L22