From a82982976ea53adf13a6a017189006fc42b9b76b Mon Sep 17 00:00:00 2001 From: Iskander Gaba Date: Mon, 13 Apr 2026 23:04:27 +0200 Subject: [PATCH 1/7] Pin uv_build version --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 19d6ee3..ea3ea1d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,5 +1,5 @@ [build-system] -requires = ["uv_build"] +requires = ["uv_build~=0.11"] build-backend = "uv_build" [project] From b407ba73703f29b8ad675c40676dbac5772f0ee7 Mon Sep 17 00:00:00 2001 From: Iskander Gaba Date: Mon, 13 Apr 2026 23:17:13 +0200 Subject: [PATCH 2/7] Remove 'default-group="all"' option and set minimum Python version for docs to 3.12 --- pyproject.toml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index ea3ea1d..647ac5f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -54,8 +54,8 @@ docs = [ "pydata-sphinx-theme~=0.16.0", ] -[tool.uv] -default-groups = "all" +[tool.uv.dependency-groups] +docs = { requires-python = ">=3.12" } [tool.ruff.lint] extend-select = ["E501"] From ec5cc03107032c8d2253f61c1dc3190b669efa2e Mon Sep 17 00:00:00 2001 From: Iskander Gaba Date: Tue, 14 Apr 2026 00:14:06 +0200 Subject: [PATCH 3/7] Clean docs/conf.py --- docs/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/conf.py b/docs/conf.py index b51ceaf..46b6afa 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -23,7 +23,7 @@ # General configuration # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration -extensions = ["numpydoc", "pydata_sphinx_theme", "sphinx.ext.intersphinx"] +extensions = ["numpydoc", "sphinx.ext.intersphinx"] templates_path = ["_templates"] exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] From 8e1c36241add24f2ac93dfbd2c502ad77086386c Mon Sep 17 00:00:00 2001 From: Iskander Gaba Date: Tue, 14 Apr 2026 00:14:53 +0200 Subject: [PATCH 4/7] Bump pydata-sphinx-theme version to 0.17.0 and add sphinx-autobuild to docs dependency group --- docs/requirements.txt | 100 +++++---- pyproject.toml | 3 +- uv.lock | 469 ++++++++++++++++++++++++++++-------------- 3 files changed, 366 insertions(+), 206 deletions(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index bd0086b..2c6be24 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -1,31 +1,35 @@ # This file was autogenerated by uv via the following command: -# uv export --group docs --no-hashes +# uv export --group docs --no-hashes -o docs/requirements.txt -e . -accessible-pygments==0.0.5 +accessible-pygments==0.0.5 ; python_full_version >= '3.12' # via pydata-sphinx-theme -alabaster==1.0.0 +alabaster==1.0.0 ; python_full_version >= '3.12' # via sphinx -babel==2.18.0 +anyio==4.13.0 ; python_full_version >= '3.12' + # via + # starlette + # watchfiles +babel==2.18.0 ; python_full_version >= '3.12' # via # pydata-sphinx-theme # sphinx -beautifulsoup4==4.14.3 +beautifulsoup4==4.14.3 ; python_full_version >= '3.12' # via pydata-sphinx-theme -certifi==2026.2.25 +certifi==2026.2.25 ; python_full_version >= '3.12' # via requests -charset-normalizer==3.4.7 +charset-normalizer==3.4.7 ; python_full_version >= '3.12' # via requests -colorama==0.4.6 ; sys_platform == 'win32' +click==8.3.2 ; python_full_version >= '3.12' + # via uvicorn +colorama==0.4.6 ; python_full_version >= '3.12' or sys_platform == 'win32' # via + # click # pytest # sphinx + # sphinx-autobuild coverage==7.13.5 # via pytest-cov -docutils==0.21.2 ; python_full_version < '3.11' - # via - # pydata-sphinx-theme - # sphinx -docutils==0.22.4 ; python_full_version >= '3.11' +docutils==0.22.4 ; python_full_version >= '3.12' # via # pydata-sphinx-theme # sphinx @@ -33,15 +37,19 @@ exceptiongroup==1.3.1 ; python_full_version < '3.11' # via pytest free-threading==1.1.1 # via pyriodicity -idna==3.11 - # via requests -imagesize==2.0.0 +h11==0.16.0 ; python_full_version >= '3.12' + # via uvicorn +idna==3.11 ; python_full_version >= '3.12' + # via + # anyio + # requests +imagesize==2.0.0 ; python_full_version >= '3.12' # via sphinx iniconfig==2.3.0 # via pytest -jinja2==3.1.6 +jinja2==3.1.6 ; python_full_version >= '3.12' # via sphinx -markupsafe==3.0.3 +markupsafe==3.0.3 ; python_full_version >= '3.12' # via jinja2 numpy==2.2.6 ; python_full_version < '3.11' # via @@ -57,8 +65,8 @@ numpy==2.4.4 ; python_full_version >= '3.11' # pywavelets # scipy # statsmodels -numpydoc==1.10.0 -packaging==26.0 +numpydoc==1.10.0 ; python_full_version >= '3.12' +packaging==26.1 # via # pytest # sphinx @@ -73,14 +81,14 @@ pluggy==1.6.0 # via # pytest # pytest-cov -pydata-sphinx-theme==0.16.1 +pydata-sphinx-theme==0.17.0 ; python_full_version >= '3.12' pygments==2.20.0 # via # accessible-pygments # pydata-sphinx-theme # pytest # sphinx -pytest==9.0.2 +pytest==9.0.3 # via pytest-cov pytest-cov==7.0.0 python-dateutil==2.9.0.post0 @@ -91,11 +99,11 @@ pywavelets==1.8.0 ; python_full_version < '3.11' # via pyriodicity pywavelets==1.9.0 ; python_full_version >= '3.11' # via pyriodicity -requests==2.33.1 +requests==2.33.1 ; python_full_version >= '3.12' # via sphinx -roman-numerals==4.1.0 ; python_full_version >= '3.11' +roman-numerals==4.1.0 ; python_full_version >= '3.12' # via sphinx -ruff==0.15.9 +ruff==0.15.11 scipy==1.15.3 ; python_full_version < '3.11' # via # pyriodicity @@ -106,47 +114,49 @@ scipy==1.17.1 ; python_full_version >= '3.11' # statsmodels six==1.17.0 # via python-dateutil -snowballstemmer==3.0.1 +snowballstemmer==3.0.1 ; python_full_version >= '3.12' # via sphinx -soupsieve==2.8.3 +soupsieve==2.8.3 ; python_full_version >= '3.12' # via beautifulsoup4 -sphinx==8.1.3 ; python_full_version < '3.11' - # via - # numpydoc - # pydata-sphinx-theme -sphinx==9.0.4 ; python_full_version == '3.11.*' - # via - # numpydoc - # pydata-sphinx-theme sphinx==9.1.0 ; python_full_version >= '3.12' # via # numpydoc # pydata-sphinx-theme -sphinxcontrib-applehelp==2.0.0 + # sphinx-autobuild 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b/docs/conf.py @@ -3,7 +3,7 @@ import tomllib -sys.path.insert(0, os.path.abspath("..")) +sys.path.insert(0, os.path.abspath("../src")) # Configuration file for the Sphinx documentation builder. # From 5f67379c48113f219683e114177296d296647697 Mon Sep 17 00:00:00 2001 From: Iskander Gaba Date: Tue, 21 Apr 2026 02:48:16 +0200 Subject: [PATCH 6/7] Create justfile Add a justfile --- docs/requirements.txt | 65 ++++++------------------------------------- justfile | 4 +++ 2 files changed, 12 insertions(+), 57 deletions(-) create mode 100644 justfile diff --git a/docs/requirements.txt b/docs/requirements.txt index 2c6be24..ac1b546 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -1,5 +1,5 @@ # This file was autogenerated by uv via the following command: -# uv export --group docs --no-hashes -o docs/requirements.txt +# uv export --no-dev --no-hashes --group docs --output-file docs/requirements.txt -e . accessible-pygments==0.0.5 ; python_full_version >= '3.12' # via pydata-sphinx-theme @@ -21,20 +21,15 @@ charset-normalizer==3.4.7 ; python_full_version >= '3.12' # via requests click==8.3.2 ; python_full_version >= '3.12' # via uvicorn -colorama==0.4.6 ; python_full_version >= '3.12' or sys_platform == 'win32' +colorama==0.4.6 ; python_full_version >= '3.12' # via # click - # pytest # sphinx # sphinx-autobuild -coverage==7.13.5 - # via pytest-cov docutils==0.22.4 ; python_full_version >= '3.12' # via # pydata-sphinx-theme # sphinx -exceptiongroup==1.3.1 ; python_full_version < '3.11' - # via pytest free-threading==1.1.1 # via pyriodicity h11==0.16.0 ; python_full_version >= '3.12' @@ -45,56 +40,27 @@ idna==3.11 ; python_full_version >= '3.12' # requests imagesize==2.0.0 ; python_full_version >= '3.12' # via sphinx -iniconfig==2.3.0 - # via pytest jinja2==3.1.6 ; python_full_version >= '3.12' # via sphinx markupsafe==3.0.3 ; python_full_version >= '3.12' # via jinja2 numpy==2.2.6 ; python_full_version < '3.11' # via - # pandas - # patsy # pywavelets # scipy - # statsmodels numpy==2.4.4 ; python_full_version >= '3.11' # via - # pandas - # patsy # pywavelets # scipy - # statsmodels numpydoc==1.10.0 ; python_full_version >= '3.12' -packaging==26.1 - # via - # pytest - # sphinx - # statsmodels -pandas==2.3.3 ; python_full_version < '3.11' - # via statsmodels -pandas==3.0.2 ; python_full_version >= '3.11' - # via statsmodels -patsy==1.0.2 - # via statsmodels -pluggy==1.6.0 - # via - # pytest - # pytest-cov +packaging==26.1 ; python_full_version >= '3.12' + # via sphinx pydata-sphinx-theme==0.17.0 ; python_full_version >= '3.12' -pygments==2.20.0 +pygments==2.20.0 ; python_full_version >= '3.12' # via # accessible-pygments # pydata-sphinx-theme - # pytest # sphinx -pytest==9.0.3 - # via pytest-cov -pytest-cov==7.0.0 -python-dateutil==2.9.0.post0 - # via pandas -pytz==2026.1.post1 ; python_full_version < '3.11' - # via pandas pywavelets==1.8.0 ; python_full_version < '3.11' # via pyriodicity pywavelets==1.9.0 ; python_full_version >= '3.11' @@ -103,17 +69,10 @@ requests==2.33.1 ; python_full_version >= '3.12' # via sphinx roman-numerals==4.1.0 ; python_full_version >= '3.12' # via sphinx -ruff==0.15.11 scipy==1.15.3 ; python_full_version < '3.11' - # via - # pyriodicity - # statsmodels + # via pyriodicity scipy==1.17.1 ; python_full_version >= '3.11' - # via - # pyriodicity - # statsmodels -six==1.17.0 - # via python-dateutil + # via pyriodicity snowballstemmer==3.0.1 ; python_full_version >= '3.12' # via sphinx soupsieve==2.8.3 ; python_full_version >= '3.12' @@ -138,20 +97,12 @@ sphinxcontrib-serializinghtml==2.0.0 ; python_full_version >= '3.12' # via sphinx starlette==1.0.0 ; python_full_version >= '3.12' # via sphinx-autobuild -statsmodels==0.14.6 -tomli==2.4.1 ; python_full_version <= '3.11' - # via - # coverage - # pytest -typing-extensions==4.15.0 ; python_full_version != '3.11.*' +typing-extensions==4.15.0 ; python_full_version >= '3.12' # via # anyio # beautifulsoup4 - # exceptiongroup # pydata-sphinx-theme # starlette -tzdata==2026.1 ; python_full_version < '3.11' or sys_platform == 'emscripten' or sys_platform == 'win32' - # via pandas urllib3==2.6.3 ; python_full_version >= '3.12' # via requests uvicorn==0.44.0 ; python_full_version >= '3.12' diff --git a/justfile b/justfile new file mode 100644 index 0000000..2cb98f7 --- /dev/null +++ b/justfile @@ -0,0 +1,4 @@ +# Upgrade project dependencies +upgrade: + uv sync --upgrade + uv export --no-dev --no-hashes --group docs --output-file docs/requirements.txt From 0cecc3f6e117f60e655e7ee335b0fe3387cda511 Mon Sep 17 00:00:00 2001 From: Iskander Gaba Date: Tue, 21 Apr 2026 03:04:24 +0200 Subject: [PATCH 7/7] Update the developer documentation --- docs/dev.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/dev.rst b/docs/dev.rst index a3f4bbd..84420d3 100644 --- a/docs/dev.rst +++ b/docs/dev.rst @@ -44,4 +44,4 @@ This project is built and published using `uv `__. .. code:: shell - uv export --group docs --no-hashes > docs/requirements.txt + uv export --no-dev --no-hashes --group docs --output-file docs/requirements.txt