update news, bump version

Author: jgreener64

NEWS.md

@@ -1,5 +1,10 @@
 # Progres release notes
 
+## v1.1.0 - Jan 2026
+
+- The Big Fantastic Virus Database (BFVD) is made available to search against.
+- The embedding mode for generating databases to search against can now split structures into domains with Chainsaw.
+
 ## v1.0.0 - Apr 2025
 
 Stable version of Progres to accompany the published paper (https://academic.oup.com/bioinformaticsadvances/article/5/1/vbaf042/8107707).

README.md

@@ -54,7 +54,7 @@ progres search -q query.pdb -t scope95
 # DOMAIN_NUM: 1
 # DOMAIN_SIZE: 150 residues (1-150)
 # DATABASE: scope95
-# PARAMETERS: minsimilarity 0.8, maxhits 100, chainsaw no, faiss no, progres v1.0.0
+# PARAMETERS: minsimilarity 0.8, maxhits 100, chainsaw no, faiss no, progres v1.1.0
 # HIT_N  DOMAIN   HIT_NRES  SIMILARITY  NOTES
       1  d1a6ja_       150      1.0000  d.112.1.1 - Nitrogen regulatory bacterial protein IIa-ntr {Escherichia coli [TaxId: 562]}
       2  d2a0ja_       146      0.9988  d.112.1.0 - automated matches {Neisseria meningitidis [TaxId: 122586]}

setup.py

@@ -5,7 +5,7 @@
 
 setuptools.setup(
     name="progres",
-    version="1.0.0",
+    version="1.1.0",
     author="Joe G Greener",
     author_email="jgreener@mrc-lmb.cam.ac.uk",
     description="Fast protein structure searching using structure graph embeddings",