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lines changed Original file line number Diff line number Diff line change @@ -16,9 +16,8 @@ DeepVariant supports germline variant-calling in diploid organisms.
1616* NGS (Illumina or Element) data for either a
1717 [ whole genome] ( docs/deepvariant-case-study.md ) or
1818 [ whole exome] ( docs/deepvariant-exome-case-study.md ) .
19- * PacBio HiFi data, see the
19+ * PacBio HiFi data
2020 [ PacBio case study] ( docs/deepvariant-pacbio-model-case-study.md ) .
21- * PacBio [ Iso-Seq/MAS-Seq case study] ( docs/deepvariant-masseq-case-study.md ) .
2221* Oxford Nanopore R10.4.1
2322 [ Simplex case study] ( docs/deepvariant-ont-r104-simplex-case-study.md ) ,
2423 [ Duplex case study] ( docs/deepvariant-ont-r104-duplex-case-study.md ) .
@@ -27,7 +26,9 @@ DeepVariant supports germline variant-calling in diploid organisms.
2726 [ G400 case study] ( docs/deepvariant-complete-g400-case-study.md ) .
2827* Pangenome-mapping-based case-study:
2928 [ vg case study] ( docs/deepvariant-vg-case-study.md ) .
30- * Illumina [ RNA-seq Case Study] ( docs/deepvariant-rnaseq-case-study.md ) .
29+ * RNA data for
30+ [ PacBio Iso-Seq/MAS-Seq case study] ( docs/deepvariant-masseq-case-study.md )
31+ and [ Illumina RNA-seq Case Study] ( docs/deepvariant-rnaseq-case-study.md ) .
3132* Hybrid PacBio HiFi + Illumina WGS, see the
3233 [ hybrid case study] ( docs/deepvariant-hybrid-case-study.md ) .
3334
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