FAIR data management of systems biology models

[carissableker]

What topic do you wish to add?
Please provide a brief description.

A page on recommendations and actions to take for data management and FAIRification of systems biology models.

Are there existing pages in the RDMkit website related to the requested page?

The section Design: mathematical model - standards and (meta)data publication
in the page Microbial biotechnology contains a limited amount of relevant information specific to microbial biotechnology.

Resources
If there are there resources that could be utilised for writing the new page, please list them below:

• Page will be based on a community manuscript currently in preparation
• [2502.15597] From FAIR to CURE: Guidelines for Computational Models of Biological Systems
• Minimum information required in the annotation of models - Wikipedia
• FAIRification of computational models in biology | bioRxiv
• standard-GEM: standardization of open-source genome-scale metabolic models | bioRxiv
• Making PBPK models more reproducible in practice
• Challenges and opportunities for system biology standards and tools in medical research
• FAIR COMBINE Archive Indicators

Context
If this request is coming from a particular project, domain, or use-case please list them below:

ELIXIR Systems Biology Community

[bedroesb]

@carissableker Thanks a lot for reaching out! We will bring this up to the editorial board and get back to you as soon as possible!

[bianchini88]

Hi @carissableker, we have briefly discussed this today, and we think it would be fantastic to have a "systems biology" domain page. Could you have a look at the various domain pages (link) and let us know if their format would fit the contents you intend to provide? If so, we will create a draft document for you to contribute. Do let us know whether you prefer to work directly on GitHub or on a Google Document.

[carissableker]

Thanks @bianchini88! We took a look and the Bioimaging data page looks to be the closest. A Google doc would be the easiest.

[bianchini88]

@carissableker templates are available here. You should be able to create a copy.