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layout ontology_detail
id obi
title Ontology for Biomedical Investigations
browsers
title label url
BioPortal Browser
BioPortal
contact
email github label orcid
bpeters@lji.org
bpeters42
Bjoern Peters
0000-0002-8457-6693
depicted_by https://svn.code.sf.net/p/obi/code/trunk/web/htdocs/images/obi-lotext.png
description An integrated ontology for the description of life-science and clinical investigations
domain investigations
homepage http://obi-ontology.org
in_foundry_order 1
license
label url
CC BY 4.0
mailing_list http://groups.google.com/group/obi-users
preferredPrefix OBI
products
id title description
obi.owl
OBI
The full version of OBI in OWL format
id title description
obi.obo
OBI in OBO
The OBO-format version of OBI
id title description
obi/obi_core.owl
OBI Core
A collection of important high-level terms and their relations from OBI and other ontologies
id title description
obi/obi-base.owl
OBI Base module
Base module for OBI
publications
id title
The Ontology for Biomedical Investigations
repository https://github.com/obi-ontology/obi
tracker http://purl.obolibrary.org/obo/obi/tracker
usages
description examples user
The Immune Epitope Database (IEDB) is funded by NIAID that catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation.
description url
A specific assay curated in the IEDB using the OBI:1110180 '3H-thymidine assay measuring epitope specific proliferation of T cells' ('3H-thymidine')
description examples user
ENCODE is a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active.
description examples user
The NASA GeneLab data repository hosts space biology and space-related datasets funded by multiple space agencies around the world.
description url
A specific assay annotated in NASA GeneLab using OBI:0001271 'RNA-seq assay'
description examples user
The CFDE is providing a centralized metadata resource to allow search across data coordination centers from multiple Common Fund programs.
description url
OBI is used in CFDE to captures types of experiments with assay terms such as OBI:0003094 'fluorescence in-situ hybridization assay'
description examples user
NIF is a dynamic inventory of Web-based neuroscience resources, data, and tools accessible via any computer connected to the Internet.
description url
A specific OBI term used to autocomplete in NIF search OBI:0100026 'organism'
activity_status active

The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of life-science and clinical investigations.