Hi @cying111 ,
The error below returned when I run bambu 3.12.
My command is
se <- bambu(reads = samples.bam, annotations = annotations, genome = fa.file, ncore = 64, rcOutDir="./rcOutput/")
The error is :
--- Start generating read class files ---
Error: BiocParallel errors
1 remote errors, element index: 1
0 unevaluated and other errors
first remote error:
Error in .Call2("C_find_overlaps_in_groups_NCList", start(q), end(q), : negative length vectors are not allowed
Execution halted
Do you have an idea how to troubleshoot? I ran on a different sample without problem.
Thanks,
Sophia
Hi @cying111 ,
The error below returned when I run bambu 3.12.
My command is
se <- bambu(reads = samples.bam, annotations = annotations, genome = fa.file, ncore = 64, rcOutDir="./rcOutput/")The error is :
--- Start generating read class files ---
Error: BiocParallel errors
1 remote errors, element index: 1
0 unevaluated and other errors
first remote error:
Error in .Call2("C_find_overlaps_in_groups_NCList", start(q), end(q), : negative length vectors are not allowed
Execution halted
Do you have an idea how to troubleshoot? I ran on a different sample without problem.
Thanks,
Sophia