jbrowse-plugin-quantseq/jbrowse_config.json at main · GMOD/jbrowse-plugin-quantseq · GitHub

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{
  "assemblies": [{
    "name": "hg38",
    "aliases": ["GRCh38"],
    "sequence": {
      "type": "ReferenceSequenceTrack",
      "trackId": "P6R5xbRqRr",
      "adapter": {
        "type": "BgzipFastaAdapter",
        "fastaLocation": {
          "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz"
        },
        "faiLocation": {
          "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz.fai"
        },
        "gziLocation": {
          "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz.gzi"
        }
      }
    },
    "refNameAliases": {
      "adapter": {
        "type": "RefNameAliasAdapter",
        "location": {
          "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/GRCh38/hg38_aliases.txt"
        }
      }
    }
  }],
  "tracks": [
    {
      "type": "QuantitativeTrack",
      "trackId": "ngmlr_cov",
      "name": "Nanog importance counts (BPNet)",
      "assemblyNames": ["hg38"],
      "adapter": {
        "type": "QuantitativeSequenceAdapter",
        "wiggleAdapter": {
          "type": "BigWigAdapter",
          "bigWigLocation": {
            "uri": "https://jbrowse.org/genomes/GRCh38/BPNet/Nanog.importance.counts.bw"
          }
        },
        "sequenceAdapter": {
          "type": "BgzipFastaAdapter",
        "fastaLocation": {
          "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz"
        },
        "faiLocation": {
          "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz.fai"
        },
        "gziLocation": {
          "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz.gzi"
        }
        }
      },
      "displays": [
        {
          "displayId": "QuantitativeSequence_display",
          "type": "QuantitativeSequenceDisplay"
        }
      ]
    }
  ],
  "plugins": [
    {
      "name": "Quantseq",
      "url": "http://localhost:9000/dist/jbrowse-plugin-quantseq.umd.development.js"
    }
  ]
}