github-actions.yml

name: github-actions
on: [push, pull_request]
permissions:
  contents: read
  pull-requests: write
jobs:
  windows-2022-staticLink-cs:
    runs-on: windows-2022
    steps:
      - uses: actions/checkout@v5
      - name: zlib install
        shell: pwsh
        run: |
          # Download and extract
          curl -L "https://github.com/madler/zlib/releases/download/v1.3.1/zlib-1.3.1.tar.gz" -o "${{ runner.temp }}\zlib.tar.gz"
          cd ${{ runner.temp }}
          tar -xzf zlib.tar.gz
          # Detect extracted folder (handles zlib-1.3.1 or future versions)
          $zlibSrc = Get-ChildItem -Directory | Where-Object { $_.Name -like "zlib-*" } | Select-Object -First 1
          Write-Host ("Detected zlib source folder: " + $zlibSrc.FullName)
          # Build directory
          mkdir zlib-build
          cd zlib-build
          # Configure and install
          cmake -G"Visual Studio 17 2022" -A x64 -T host=x64 -Wno-dev -Wno-deprecated -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/zlib-install $zlibSrc.FullName
          cmake --build . --config Release -j2
          cmake --build . --config Release --target INSTALL
      - name: Minizip static lib install
        run: |
          git clone https://github.com/F2I-Consulting/Minizip.git ${{ runner.temp }}/Minizip
          cd ${{ runner.temp }}
          mkdir minizip-build
          cd minizip-build
          cmake -G"Visual Studio 17 2022" -A x64 -T host=x64 -Wno-dev -Wno-deprecated -DBUILD_SHARED_LIBS=FALSE -DZLIB_ROOT=${{ runner.temp }}/zlib-install -DZLIB_USE_STATIC_LIBS=TRUE -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/minizip-install ${{ runner.temp }}/Minizip
          cmake --build . --config Release -j2
          cmake --build . --config Release --target INSTALL
      - name: HDF5 install
        run: |
          curl -L "https://support.hdfgroup.org/releases/hdf5/v2_0/v2_0_0/downloads/hdf5-2.0.0.zip" -o "${{ runner.temp }}\hdf5-2.0.0.zip"
          cd ${{ runner.temp }}
          Expand-Archive ${{ runner.temp }}\hdf5-2.0.0.zip -DestinationPath ${{ runner.temp }}
          mkdir hdf5-build
          cd hdf5-build
          cmake -G"Visual Studio 17 2022" -A x64 -T host=x64 -Wno-dev -Wno-deprecated -DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=ON -DZLIB_ROOT:PATH=${{ runner.temp }}/zlib-install -DZLIB_INCLUDE_DIR:PATH=${{ runner.temp }}/zlib-install/include -DZLIB_LIBRARY:PATH=${{ runner.temp }}/zlib-install/lib/zlibstatic.lib -DBUILD_SHARED_LIBS:BOOL=OFF -DHDF5_BUILD_FORTRAN:BOOL=OFF -DHDF5_BUILD_JAVA:BOOL=OFF -DHDF5_ENABLE_PARALLEL:BOOL=OFF -DHDF5_BUILD_CPP_LIB:BOOL=OFF -DHDF5_BUILD_HL_LIB:BOOL=OFF -DHDF5_BUILD_EXAMPLES:BOOL=OFF -DHDF5_BUILD_GENERATORS:BOOL=OFF -DHDF5_BUILD_TOOLS:BOOL=OFF -DHDF5_BUILD_UTILS:BOOL=OFF -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/hdf5-install ${{ runner.temp }}/hdf5-2.0.0
          cmake --build . --config Release -j2
          cmake --build . --config Release --target INSTALL
      - name: Boost install
        run: |
          curl -L "https://archives.boost.io/release/1.90.0/binaries/boost_1_90_0-msvc-14.2-64.exe" -o "${{ runner.temp }}\boost.exe"
          Start-Process -Wait -FilePath "${{ runner.temp }}\boost.exe" "/SILENT","/SP-","/SUPPRESSMSGBOXES","/DIR=${{ runner.temp }}\boost-install"
      - name: Swig install
        run: |
          curl -L "http://prdownloads.sourceforge.net/swig/swigwin-4.4.1.zip" -o "${{ runner.temp }}\swigwin-4.4.1.zip"
          7z x ${{ runner.temp }}\swigwin-4.4.1.zip -o${{ runner.temp }}
      - name: CMake build and install
        run: |
          cd ${{ github.workspace }}/..
          mkdir build
          cd build
          cmake -G"Visual Studio 17 2022" -A x64 -T host=x64 -Wno-dev -Wno-deprecated -DHDF5_ROOT=${{ runner.temp }}/hdf5-install -DHDF5_USE_STATIC_LIBRARIES=TRUE -DMINIZIP_ROOT=${{ runner.temp }}/minizip-install -DZLIB_ROOT=${{ runner.temp }}/zlib-install -DZLIB_USE_STATIC_LIBS=TRUE -DBoost_INCLUDE_DIR=${{ runner.temp }}/boost-install -DWITH_EXAMPLE=TRUE -DWITH_RESQML2_2=TRUE -DWITH_DOTNET_WRAPPING=TRUE -DSWIG_EXECUTABLE=${{ runner.temp }}/swigwin-4.4.1/swig.exe -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/fesapi-install ${{ github.workspace }}
          cmake --build . --config Release -j2
          cmake --build . --config Release --target INSTALL
      - name: Add msbuild to PATH
        uses: microsoft/setup-msbuild@v2
        with:
          msbuild-architecture: x64
      - name: Build the C# example
        run: msbuild ${{ github.workspace }}/cs/example/example.sln -t:rebuild /p:Configuration=Release /p:Platform="x64"
      - name: Run Cpp example
        run: |
          ${{ github.workspace }}\..\build\Release\example.exe
      - name: Copy all dlls for C#
        run: |
          Copy-Item ${{ github.workspace }}\..\build\Release\*.dll -Destination ${{ github.workspace }}\cs\example\bin\x64\Release
      - name: Run C# example
        run: |
          ${{ github.workspace }}\cs\example\bin\x64\Release\example.exe
  ubuntu-22-java11:
    runs-on: ubuntu-22.04
    strategy:
      fail-fast: false  # 'false' means Don't stop matrix workflows even if some matrix failed.
      matrix:
        include: [
          { xcc_name: 'gcc 10',     xcc_pkg: gcc-10,      cc: gcc-10,     cxx: g++-10 },
          { xcc_name: 'gcc 12',     xcc_pkg: gcc-12,      cc: gcc-12,     cxx: g++-12 },
          { xcc_name: 'clang 13',   xcc_pkg: clang-13,    cc: clang-13,   cxx: clang++-13 },
          { xcc_name: 'clang 15',   xcc_pkg: clang-15,    cc: clang-15,   cxx: clang++-15 },
        ]
    env:
      XCC: ${{ matrix.xcc_name }}
      CC: ${{ matrix.cc }}
      CXX: ${{ matrix.cxx }}
    steps:
      - uses: actions/checkout@v5
      - uses: actions/setup-java@v5
        with:
          distribution: 'temurin' # See 'Supported distributions' for available options
          java-version: '11'
      - name: APT install
        run: |
          sudo apt update
          sudo apt install -y ${{ matrix.xcc_pkg }} libminizip-dev libboost-all-dev
# Build HDF5 instead of downloading the package because the package is not built with -fPIC causing relocation issue.
      - name: HDF5 build and install
        run: |
          cd ${{ runner.temp }}
          wget --no-verbose https://support.hdfgroup.org/releases/hdf5/v2_0/v2_0_0/downloads/hdf5-2.0.0.tar.gz
          tar -xzf hdf5-2.0.0.tar.gz
          cd hdf5-2.0.0
          mkdir build
          cd build
          cmake -G "Unix Makefiles" -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DHDF5_BUILD_FORTRAN:BOOL=OFF -DHDF5_BUILD_JAVA:BOOL=OFF -DHDF5_ENABLE_PARALLEL:BOOL=OFF -DHDF5_BUILD_CPP_LIB:BOOL=OFF -DHDF5_BUILD_HL_LIB:BOOL=OFF -DHDF5_BUILD_EXAMPLES:BOOL=OFF -DHDF5_BUILD_GENERATORS:BOOL=OFF -DHDF5_BUILD_TOOLS:BOOL=OFF -DHDF5_BUILD_UTILS:BOOL=OFF -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX:STRING=${{ runner.temp }}/install-hdf5 ..
          cmake --build . --config Release
          make -j4
          make install
      - name: CMake build and install
        run: |
          cd ..
          mkdir build
          cd build
          cmake -DHDF5_ROOT=${{ runner.temp }}/install-hdf5 -DHDF5_USE_STATIC_LIBRARIES=TRUE -DCMAKE_BUILD_TYPE=Release -DWITH_JAVA_WRAPPING=TRUE ${{ github.workspace }} -DCMAKE_C_COMPILER=${{ matrix.cc }} -DCMAKE_CXX_COMPILER=${{ matrix.cxx }} -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/fesapi-install
          cmake --build . -j2
          cmake --install .
      - name: Run java example
        run: |
          cd ${{ github.workspace }}/java/src
          javac -cp `find ${{ runner.temp }}/fesapi-install -name fesapiJava*.jar` com/f2i_consulting/example/FesapiJavaExample.java
          java -Djava.library.path=${{ runner.temp }}/fesapi-install/lib -cp `find ${{ runner.temp }}/fesapi-install -name fesapiJava*.jar`:. com.f2i_consulting.example.FesapiJavaExample
      - uses: actions/upload-artifact@v4
        with:
          name: ubuntu-22.04-${{ matrix.cxx }}
          path: ${{ runner.temp }}/fesapi-install
  build_wheels_windows:
    name: Build wheels on windows-latest
    runs-on: windows-latest
    steps:
      - uses: actions/checkout@v5
      - name: Stub `setup.py` check
        # It will be generated during CMake run
        # https://github.com/pypa/cibuildwheel/issues/1139
        run: touch python/setup.py
      - name: Build wheels
        uses: pypa/cibuildwheel@v3.2.1
        env:
          CIBW_BUILD: cp38-win_amd64 cp39-win_amd64 cp310-win_amd64 cp311-win_amd64 cp312-win_amd64 cp313-win_amd64
          CIBW_ARCHS: auto64
          CIBW_BEFORE_ALL: >
            %VCPKG_INSTALLATION_ROOT%\vcpkg install boost-uuid minizip hdf5[zlib] &&
            cd ${{ runner.temp }} &&
            mkdir fesapi-build &&
            cd fesapi-build &&
            cmake -DCMAKE_TOOLCHAIN_FILE=%VCPKG_INSTALLATION_ROOT%\scripts\buildsystems\vcpkg.cmake -G"Visual Studio 17 2022" -A x64 -T host=x64 -Wno-dev -Wno-deprecated -DWITH_PYTHON_WRAPPING=TRUE -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/fesapi-install ${{ github.workspace }} &&
            cmake --build . --config Release -j2 &&
            cmake --build . --config Release --target INSTALL &&
            pip install delvewheel
          CIBW_REPAIR_WHEEL_COMMAND_WINDOWS: >
            delvewheel repair --add-path ${{ runner.temp }}\fesapi-build\Release --namespace-pkg fesapi -w {dest_dir} {wheel}
          CIBW_TEST_COMMAND: python ${{github.workspace}}\python\example\example.py
        with:
          package-dir: ./python
          output-dir: wheelhouse
      - uses: actions/upload-artifact@v4
        with:
          name: cibw-wheels-windows
          path: ./wheelhouse/*.whl
  build_wheels_linux:
    name: Build wheels on ubuntu-latest
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v5
      - name: Stub `setup.py` check
        # It will be generated during CMake run
        # https://github.com/pypa/cibuildwheel/issues/1139
        run: touch python/setup.py
      - name: Build wheels
        uses: pypa/cibuildwheel@v3.2.1
        # RedHat nor Debian maintain security patches for hdf5. We consequently build the latest HDF5 version.
        env:
          CIBW_BUILD: cp38-manylinux_* cp39-manylinux_* cp310-manylinux_* cp311-manylinux_* cp312-manylinux_* cp313-manylinux_*
          CIBW_ARCHS: auto64
          CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
          CIBW_BEFORE_ALL: >
            yum install -y wget gcc-c++ boost-devel &&
            yum search epel-release &&
            yum info epel-release &&
            yum install -y epel-release &&
            yum --enablerepo=epel install -y minizip1.2-devel cmake3 &&
            wget --no-verbose https://support.hdfgroup.org/releases/hdf5/v2_0/v2_0_0/downloads/hdf5-2.0.0.tar.gz && 
            tar -xzf hdf5-2.0.0.tar.gz &&
            cd hdf5-2.0.0 &&
            mkdir build &&
            cd build &&
            cmake -G "Unix Makefiles" -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DHDF5_BUILD_FORTRAN:BOOL=OFF -DHDF5_BUILD_JAVA:BOOL=OFF -DHDF5_ENABLE_PARALLEL:BOOL=OFF -DHDF5_BUILD_CPP_LIB:BOOL=OFF -DHDF5_BUILD_HL_LIB:BOOL=OFF -DHDF5_BUILD_EXAMPLES:BOOL=OFF -DHDF5_BUILD_GENERATORS:BOOL=OFF -DHDF5_BUILD_TOOLS:BOOL=OFF -DHDF5_BUILD_UTILS:BOOL=OFF -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX:STRING=${{ github.workspace }}/../hdf5-install .. &&
            cmake --build . --config Release &&
            make -j4 &&
            make install &&
            cd ../.. &&
            mkdir build &&
            cd build &&
            cmake3 -DCMAKE_BUILD_TYPE=Release -DHDF5_ROOT=${{ github.workspace }}/../hdf5-install -DHDF5_USE_STATIC_LIBRARIES=TRUE -DWITH_PYTHON_WRAPPING=TRUE -DCMAKE_INSTALL_PREFIX:STRING=/fesapi-install {project} &&
            cmake3 --build . -j2 --config Release &&
            cmake3 --install .
          CIBW_REPAIR_WHEEL_COMMAND_LINUX: >
            export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/fesapi-install/lib64 &&
            auditwheel repair -w {dest_dir} {wheel}
          CIBW_TEST_COMMAND: python {project}/python/example/example.py
        with:
          package-dir: ./python
          output-dir: wheelhouse
      - uses: actions/upload-artifact@v4
        with:
          name: cibw-wheels-manylinux_2_28
          path: ./wheelhouse/*.whl
  build_wheels_mac:
    name: Build wheels on macos-14
    runs-on: macos-14
    steps:
      - uses: actions/checkout@v5
      - name: Stub `setup.py` check
        # It will be generated during CMake run
        # https://github.com/pypa/cibuildwheel/issues/1139
        run: touch python/setup.py
      - name: Build wheels
        uses: pypa/cibuildwheel@v3.2.1
        env:
          CIBW_BUILD: cp38-macosx_* cp39-macosx_* cp310-macosx_* cp311-macosx_* cp312-macosx_* cp313-macosx_*
          CIBW_ARCHS: auto64
          # See https://cibuildwheel.pypa.io/en/stable/cpp_standards/#macos-and-deployment-target-versions
          MACOSX_DEPLOYMENT_TARGET: 11.0
          # Dont use brew for dependencies https://github.com/pypa/cibuildwheel/issues/1251#issuecomment-1234553537
          CIBW_BEFORE_ALL: >
            cd ${{ github.workspace }}/.. &&
            wget --no-verbose https://archives.boost.io/release/1.90.0/source/boost_1_90_0.tar.gz &&
            tar xf boost_1_90_0.tar.gz &&
            git clone https://github.com/F2I-Consulting/Minizip.git ${{ github.workspace }}/../minizip &&
            mkdir ${{ github.workspace }}/../minizip-build &&
            cd ${{ github.workspace }}/../minizip-build &&
            cmake -G "Unix Makefiles" -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DCMAKE_INSTALL_PREFIX=${{ github.workspace }}/../minizip-install ${{ github.workspace }}/../minizip &&
            cmake --build . -j2 --config Release &&
            cmake --install . &&
            cd ${{ github.workspace }}/.. &&
            wget --no-verbose https://support.hdfgroup.org/releases/hdf5/v2_0/v2_0_0/downloads/hdf5-2.0.0.tar.gz &&
            tar xf hdf5-2.0.0.tar.gz &&
            mkdir hdf5-build &&
            cd hdf5-build &&
            cmake -G "Unix Makefiles" -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DHDF5_BUILD_FORTRAN:BOOL=OFF -DHDF5_BUILD_JAVA:BOOL=OFF -DHDF5_ENABLE_PARALLEL:BOOL=OFF -DHDF5_BUILD_CPP_LIB:BOOL=OFF -DHDF5_BUILD_HL_LIB:BOOL=OFF -DHDF5_BUILD_EXAMPLES:BOOL=OFF -DHDF5_BUILD_GENERATORS:BOOL=OFF -DHDF5_BUILD_TOOLS:BOOL=OFF -DHDF5_BUILD_UTILS:BOOL=OFF -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX:STRING=${{ github.workspace }}/../hdf5-install ${{ github.workspace }}/../hdf5-2.0.0 &&
            cmake --build . -j2 --config Release &&
            cmake --install . &&
            brew install swig &&
            mkdir ${{ github.workspace }}/../build &&
            cd ${{ github.workspace }}/../build &&
            cmake -DCMAKE_BUILD_TYPE=Release -DBOOST_ROOT=${{ github.workspace }}/../boost_1_90_0 -DMINIZIP_ROOT=${{ github.workspace }}/../minizip-install -DHDF5_ROOT=${{ github.workspace }}/../hdf5-install -DHDF5_USE_STATIC_LIBRARIES=TRUE -DWITH_PYTHON_WRAPPING=TRUE -DCMAKE_INSTALL_PREFIX:STRING=${{ github.workspace }}/../fesapi-install ${{ github.workspace }} &&
            cmake --build . -j2 --config Release &&
            cmake --install .
          # See https://cibuildwheel.pypa.io/en/stable/faq/#macos-passing-dyld_library_path-to-delocate
          CIBW_REPAIR_WHEEL_COMMAND_MACOS: >
            DYLD_LIBRARY_PATH=${{ github.workspace }}/../fesapi-install/lib delocate-wheel --require-archs {delocate_archs} -w {dest_dir} {wheel}
          CIBW_TEST_COMMAND: python ${{ github.workspace }}/python/example/example.py
        with:
          package-dir: ./python
          output-dir: wheelhouse
      - uses: actions/upload-artifact@v4
        with:
          name: cibw-wheels-macosx_arm64
          path: ./wheelhouse/*.whl
  ubuntu-20-mpi:
    runs-on: ubuntu-22.04    
    steps:
      - name: Checkout
        uses: actions/checkout@v5
      - name: APT install
        run: |
          sudo apt update
          sudo apt install -y libhdf5-mpi-dev libminizip-dev libboost-all-dev
      - name: Setup MPI
        uses: mpi4py/setup-mpi@v1
      - name: CMake build and install
        run: |
          cd ${{ runner.temp }}
          mkdir build
          cd build
          cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_CXX_COMPILER=mpic++ -DCMAKE_C_COMPILER=mpicc -DHDF5_PREFER_PARALLEL:BOOL=TRUE -DWITH_EXAMPLE:BOOL=TRUE -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/fesapi-install ${{ github.workspace }}
          cmake --build . -j2
          cmake --install .
      - name: Run example
        run: mpiexec -n 2 ${{ runner.temp }}/fesapi-install/example
  ubuntu-latest-valgrind-unitTest:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v5
      - name: APT install
        run: |
          sudo apt update
          sudo apt install -y libhdf5-dev libminizip-dev libboost-all-dev valgrind
      - name: CMake build and install
        run: |
          cd ..
          mkdir build
          cd build
          cmake -DCMAKE_BUILD_TYPE=Debug -DWITH_EXAMPLE=TRUE -DWITH_RESQML2_2=TRUE -DWITH_TEST=TRUE -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/fesapi-install ${{ github.workspace }}
          cmake --build . -j2 --config Debug
          cmake --install .
      - name: Run Valgrind on example
        run: |
          valgrind --leak-check=full --track-origins=yes --show-leak-kinds=all ${{ github.workspace }}/../build/example/exampled
      - name: Run Unit tests
        run: |
          ${{ github.workspace }}/../build/test/unitTest