PBS_simulations.pbs

#!/bin/bash
#PBS -l select=1:ncpus=2:mem=90GB
#PBS -l walltime=23:59:59
#PBS -J 1-6
#PBS -j oe
#PBS -M mngu3236@uni.sydney.edu.au
#PBS -m ae

cd $PBS_O_WORKDIR
echo $PBS_O_WORKDIR
echo $PBS_ARRAY_INDEX

ts_lengths=(50 100 500 1000 5000 10000) 
source_type="random"
driving_feature_timescale=10

counter=0
for ts_length in "${ts_lengths[@]}"; do
	counter=$((counter+1))
	if [ "$counter" == "$PBS_ARRAY_INDEX" ]; then
		echo $ts_length
		out=124
		while [ $out -eq 124 ]	
		do
			bash -c "Rscript main.R --ts_length=$ts_length --source_type=$source_type --driving_feature_timescale=$driving_feature_timescale" 2>&1 | tee "$HOME/jobs/${PBS_JOBID}.log"
			out=$?
			echo "Calculations exited with code ${out}" >> "$HOME/jobs/${PBS_JOBID}.log"
		done
	fi
done